Usage Examples

The best prompts clearly state the two groups you want to compare and, when relevant, the sequencing modality.

Prompt patterns that work well

Use prompts like these:

Use Synthesize Bio to compare gene expression between heart and liver cells.

Use the Synthesize Bio connector to analyze lung adenocarcinoma tumor vs normal lung tissue.

Analyze CD4+ T cells vs CD8+ T cells in single-cell RNA-seq mode using Synthesize Bio.

Include the details that matter most:

Keep the comparison focused on two groups.
Use direct comparison language such as A vs B.
If you want biological interpretation after the analysis, ask for it in a follow-up prompt.

After the analysis is complete, users can continue with questions like:

Summarize the top up-regulated and down-regulated genes in plain English.

Explain which pathways seem most relevant based on these differentially expressed genes.

Turn the result into a short research-style summary I can share with my team.

If a user runs into issues, continue to Troubleshooting.