R SDK - Synthesize Bio

rsynthbio is an R package that provides a convenient interface to the Synthesize Bio API. It lets you generate realistic gene expression data for specified biological conditions, work with reference samples, and predict metadata from observed expression, all from R. If you’d prefer 1-click dataset generation and analysis, try the web platform.

Installation

Install from CRAN, GitHub, or a local source build.

Getting started

Authenticate, list models, and make your first prediction.

Baseline models

Generate synthetic expression from metadata alone.

Reference conditioning

Anchor generation to a real reference sample.

Metadata prediction

Infer biological metadata from observed expression.

Function reference

Generated from the package help pages in this repo.

Quickstart

library(rsynthbio)

set_synthesize_token(use_keyring = TRUE)

query <- get_example_query(model_id = "gem-1-bulk")$example_query
result <- predict_query(query, model_id = "gem-1-bulk")

metadata <- result$metadata
expression <- result$expression

Source and support

Installation

⌘I

Installation

Getting started

Baseline models

Reference conditioning

Metadata prediction

Function reference

​Quickstart

​Source and support

Quickstart

Source and support