# Synthesize Bio

> Documentation for the Synthesize Bio platform, SDKs, and integrations.

## Docs

- [Available metadata](https://docs.synthesize.bio/get-started/available-metadata.md): Browse and download the metadata vocabularies that each Synthesize Bio model accepts.
- [Public dataset preprocessing](https://docs.synthesize.bio/get-started/data-preprocessing.md): Learn how Synthesize Bio sources, processes, and quality-checks public bulk RNA-seq datasets.
- [Quickstart](https://docs.synthesize.bio/get-started/quickstart.md): Sign up, get an API key, and make your first request to Synthesize Bio.
- [Start generating genomics data with Synthesize Bio](https://docs.synthesize.bio/index.md)
- [Authentication](https://docs.synthesize.bio/platform/authentication.md): How authentication works for the Synthesize Bio MCP server, including OAuth and API key access.
- [Set up the Claude Connector](https://docs.synthesize.bio/platform/connect-in-claude.md): Find the Synthesize Bio Claude Connector in Claude and complete the first-time OAuth flow.
- [How It Works](https://docs.synthesize.bio/platform/how-it-works.md): Understand the asynchronous job flow and the analysis stages Synthesize Bio MCP runs for each request.
- [Synthesize Bio MCP](https://docs.synthesize.bio/platform/index.md): Use Synthesize Bio MCP to run gene expression analyses from natural-language prompts with the Synthesize Bio Claude Connector.
- [Overview](https://docs.synthesize.bio/platform/overview.md): Learn what Synthesize Bio MCP does, what inputs it expects, and what results users can expect back.
- [Privacy and Support](https://docs.synthesize.bio/platform/privacy-and-support.md): Find support contact details, privacy links, and account resources for Synthesize Bio MCP.
- [Tools Reference](https://docs.synthesize.bio/platform/tools-reference.md): Complete reference for every tool exposed by the Synthesize Bio MCP server.
- [Troubleshooting](https://docs.synthesize.bio/platform/troubleshooting.md): Fix common connection, authentication, and analysis-expectation issues when using Synthesize Bio MCP.
- [Usage Examples](https://docs.synthesize.bio/platform/usage-examples.md): Example prompts and practical guidance for writing better gene expression analysis requests in Claude.
- [Available metadata](https://docs.synthesize.bio/pysynthbio/available-metadata.md): Browse and download the metadata vocabularies that each Synthesize Bio model accepts.
- [Getting started](https://docs.synthesize.bio/pysynthbio/getting-started.md): Authenticate, list models, and make your first prediction with pysynthbio.
- [Python SDK](https://docs.synthesize.bio/pysynthbio/index.md): pysynthbio — the official Python client for the Synthesize Bio platform.
- [Installation](https://docs.synthesize.bio/pysynthbio/installation.md): Install pysynthbio from PyPI, source, or a GitHub release.
- [License](https://docs.synthesize.bio/pysynthbio/license.md): pysynthbio is licensed under the MIT License.
- [Baseline models](https://docs.synthesize.bio/pysynthbio/models/baseline.md): Generate synthetic gene expression data from metadata alone.
- [Metadata prediction](https://docs.synthesize.bio/pysynthbio/models/metadata-prediction.md): Infer biological metadata from observed expression data.
- [Reference conditioning](https://docs.synthesize.bio/pysynthbio/models/reference-conditioning.md): Generate expression data conditioned on a real reference sample.
- [Available metadata](https://docs.synthesize.bio/rsynthbio/available-metadata.md): Browse and download the metadata vocabularies that each Synthesize Bio model accepts.
- [Getting started](https://docs.synthesize.bio/rsynthbio/getting-started.md): Authenticate, list models, and make your first prediction with rsynthbio.
- [R SDK](https://docs.synthesize.bio/rsynthbio/index.md): rsynthbio — the official R client for the Synthesize Bio platform.
- [Installation](https://docs.synthesize.bio/rsynthbio/installation.md): Install rsynthbio from CRAN, GitHub, or a local source build.
- [License](https://docs.synthesize.bio/rsynthbio/license.md): rsynthbio is licensed under the MIT License.
- [Baseline models](https://docs.synthesize.bio/rsynthbio/models/baseline.md): Generate synthetic gene expression data from metadata alone.
- [Metadata prediction](https://docs.synthesize.bio/rsynthbio/models/metadata-prediction.md): Infer biological metadata from observed expression data.
- [Reference conditioning](https://docs.synthesize.bio/rsynthbio/models/reference-conditioning.md): Generate expression data conditioned on a real reference sample.
- [Function reference](https://docs.synthesize.bio/rsynthbio/reference.md): Generated reference pages for exported rsynthbio functions and constants.
- [API_BASE_URL](https://docs.synthesize.bio/rsynthbio/reference/API_BASE_URL.md): API Base URL.
- [DEFAULT_POLL_INTERVAL_SECONDS](https://docs.synthesize.bio/rsynthbio/reference/DEFAULT_POLL_INTERVAL_SECONDS.md): Default Poll Interval.
- [DEFAULT_POLL_TIMEOUT_SECONDS](https://docs.synthesize.bio/rsynthbio/reference/DEFAULT_POLL_TIMEOUT_SECONDS.md): Default Poll Timeout.
- [DEFAULT_TIMEOUT](https://docs.synthesize.bio/rsynthbio/reference/DEFAULT_TIMEOUT.md): Default Timeout.
- [clear_synthesize_token](https://docs.synthesize.bio/rsynthbio/reference/clear_synthesize_token.md): Clear Synthesize Bio API Token.
- [get_example_query](https://docs.synthesize.bio/rsynthbio/reference/get_example_query.md): Get Example Query for Model.
- [has_synthesize_token](https://docs.synthesize.bio/rsynthbio/reference/has_synthesize_token.md): Check if Synthesize Bio API Token is Set.
- [list_models](https://docs.synthesize.bio/rsynthbio/reference/list_models.md): List Available Models.
- [load_synthesize_token_from_keyring](https://docs.synthesize.bio/rsynthbio/reference/load_synthesize_token_from_keyring.md): Load Synthesize Bio API Token from Keyring.
- [predict_query](https://docs.synthesize.bio/rsynthbio/reference/predict_query.md): Predict Gene Expression.
- [set_synthesize_token](https://docs.synthesize.bio/rsynthbio/reference/set_synthesize_token.md): Set Synthesize Bio API Token.